PyDesigner
latest
Installation
Changelog
PyDesigner Requirements
FSL
MRtrix3 Installation
Python
PyDesigner
NeuroDock (Docker)
NeuroDock
Docker Installation
Docker Configuration
Install NeuroDock
Run NeuroDock
Processing
Dataset Requirements
PyDesigner Syntax
Reference
List of Flags
List of Output Files
Grants
Contributors
PyDesigner
Docs
»
Index
Edit on GitHub
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
A
akccorrect() (designer.fitting.dwipy.DWI method)
akcoutliers() (designer.fitting.dwipy.DWI method)
B
brainmask() (in module designer.preprocessing.mrpreproc)
C
cat() (designer.preprocessing.util.DWIParser method)
clipImage() (in module designer.system.utils)
commandhistory() (in module designer.preprocessing.mrinfoutil)
computesnr() (designer.plotting.snrplot.makesnr method)
convertLPS() (in module designer.tractography.dsistudio)
createConstraints() (designer.fitting.dwipy.DWI method)
createTensorOrder() (designer.fitting.dwipy.DWI method)
csfmask() (in module designer.preprocessing.mrpreproc)
D
datatype() (in module designer.preprocessing.mrinfoutil)
degibbs() (in module designer.preprocessing.mrpreproc)
denoise() (in module designer.preprocessing.mrpreproc)
designer
module
designer.fitting
module
designer.fitting.dwi_fnames
module
designer.fitting.dwidirs
module
designer.fitting.dwipy
module
designer.fitting.thresholds
module
designer.info
module
designer.plotting
module
designer.plotting.motionplot
module
designer.plotting.outlierplot
module
designer.plotting.snrplot
module
designer.postprocessing
module
designer.postprocessing.filters
module
designer.preprocessing
module
designer.preprocessing.mrinfoutil
module
designer.preprocessing.mrpreproc
module
designer.preprocessing.preparation
module
designer.preprocessing.rician
module
designer.preprocessing.smoothing
module
designer.preprocessing.util
module
designer.system
module
designer.system.utils
module
designer.tractography
module
designer.tractography.dsistudio
module
designer.tractography.odf
module
designer.tractography.sphericalsampling
module
diffusionCoeff() (designer.fitting.dwipy.DWI method)
dkiodf() (designer.tractography.odf.odfmodel method)
dkiodfcartesian() (in module designer.tractography.odf)
dkiodfhelper() (designer.tractography.odf.odfmodel method)
dkiodfspherical() (in module designer.tractography.odf)
dkiTensorParams() (designer.fitting.dwipy.DWI method)
dsigrid() (in module designer.tractography.sphericalsampling)
dtiodf() (designer.tractography.odf.odfmodel method)
dtiodfhelper() (designer.tractography.odf.odfmodel method)
dtiodfspherical() (in module designer.tractography.odf)
dtiTensorParams() (designer.fitting.dwipy.DWI method)
DWI (class in designer.fitting.dwipy)
dwiextract() (in module designer.preprocessing.mrpreproc)
DWIFile (class in designer.preprocessing.util)
DWIParser (class in designer.preprocessing.util)
dwscheme() (in module designer.preprocessing.mrinfoutil)
E
echotime() (in module designer.preprocessing.mrinfoutil)
epiboost() (in module designer.preprocessing.mrpreproc)
extractbzero() (in module designer.preprocessing.mrpreproc)
extractDKI() (designer.fitting.dwipy.DWI method)
extractDTI() (designer.fitting.dwipy.DWI method)
extractmeanbzero() (in module designer.preprocessing.mrpreproc)
extractmeanshell() (in module designer.preprocessing.mrpreproc)
extractnonbzero() (in module designer.preprocessing.mrpreproc)
extractshell() (in module designer.preprocessing.mrpreproc)
extractWMTI() (designer.fitting.dwipy.DWI method)
F
fbi() (designer.fitting.dwipy.DWI method)
fibonacciSphere() (designer.fitting.dwipy.DWI method)
find_valid_ext() (in module designer.preprocessing.util)
findViols() (designer.fitting.dwipy.DWI method)
findVoxelViol() (designer.fitting.dwipy.DWI method)
fit() (designer.fitting.dwipy.DWI method)
fit_regime() (in module designer.fitting.dwipy)
fix_bval() (in module designer.preprocessing.preparation)
format() (in module designer.preprocessing.mrinfoutil)
G
get_dsi_studio_ODF_geometry() (in module designer.tractography.dsistudio)
getBVAL() (designer.preprocessing.util.DWIFile method)
getBvals() (designer.fitting.dwipy.DWI method)
getBVEC() (designer.preprocessing.util.DWIFile method)
getBvecs() (designer.fitting.dwipy.DWI method)
getconsole() (in module designer.preprocessing.mrinfoutil)
getFull() (designer.preprocessing.util.DWIFile method)
getJSON() (designer.preprocessing.util.DWIFile method)
getName() (designer.preprocessing.util.DWIFile method)
getndirs() (designer.fitting.dwipy.DWI method)
getPath() (designer.preprocessing.util.DWIFile method)
(designer.preprocessing.util.DWIParser method)
getuniquebval() (designer.plotting.snrplot.makesnr method)
goodDirections() (designer.fitting.dwipy.DWI method)
H
hasJSON() (designer.preprocessing.util.DWIFile method)
highprecisionexp() (in module designer.system.utils)
highprecisionpower() (in module designer.system.utils)
histcount() (designer.plotting.snrplot.makesnr method)
I
idxb0() (designer.fitting.dwipy.DWI method)
idxdki() (designer.fitting.dwipy.DWI method)
idxdti() (designer.fitting.dwipy.DWI method)
idxfbi() (designer.fitting.dwipy.DWI method)
irlls() (designer.fitting.dwipy.DWI method)
irllsviolmask() (designer.fitting.dwipy.DWI method)
is_fullsphere() (in module designer.preprocessing.mrinfoutil)
isAcquisition() (designer.preprocessing.util.DWIFile method)
isdki() (designer.fitting.dwipy.DWI method)
isdti() (designer.fitting.dwipy.DWI method)
isfbi() (designer.fitting.dwipy.DWI method)
isfbwm() (designer.fitting.dwipy.DWI method)
isPartialFourier() (designer.preprocessing.util.DWIFile method)
J
json2fslgrad() (in module designer.preprocessing.util)
K
kurtosisCoeff() (designer.fitting.dwipy.DWI method)
M
make_se_epi() (in module designer.preprocessing.preparation)
make_simple_mif() (in module designer.preprocessing.preparation)
makefib() (in module designer.tractography.dsistudio)
makeplot() (designer.plotting.snrplot.makesnr method)
makesnr (class in designer.plotting.snrplot)
max_shell() (in module designer.preprocessing.mrinfoutil)
maxBval() (designer.fitting.dwipy.DWI method)
maxDKIBval() (designer.fitting.dwipy.DWI method)
maxDTIBval() (designer.fitting.dwipy.DWI method)
maxFBIBval() (designer.fitting.dwipy.DWI method)
median() (in module designer.postprocessing.filters)
miftonii() (in module designer.preprocessing.mrpreproc)
module
designer
designer.fitting
designer.fitting.dwi_fnames
designer.fitting.dwidirs
designer.fitting.dwipy
designer.fitting.thresholds
designer.info
designer.plotting
designer.plotting.motionplot
designer.plotting.outlierplot
designer.plotting.snrplot
designer.postprocessing
designer.postprocessing.filters
designer.preprocessing
designer.preprocessing.mrinfoutil
designer.preprocessing.mrpreproc
designer.preprocessing.preparation
designer.preprocessing.rician
designer.preprocessing.smoothing
designer.preprocessing.util
designer.system
designer.system.utils
designer.tractography
designer.tractography.dsistudio
designer.tractography.odf
designer.tractography.sphericalsampling
multiplier() (in module designer.preprocessing.mrinfoutil)
multiplyMask() (designer.fitting.dwipy.DWI method)
N
nansmooth() (in module designer.preprocessing.smoothing)
ndim() (in module designer.preprocessing.mrinfoutil)
niitomif() (in module designer.preprocessing.mrpreproc)
num_shells() (in module designer.preprocessing.mrinfoutil)
O
odf2sh() (designer.tractography.odf.odfmodel method)
odf2shhelper() (designer.tractography.odf.odfmodel method)
odfgrid() (in module designer.tractography.sphericalsampling)
odfmaxhelper() (designer.tractography.odf.odfmodel method)
odfmodel (class in designer.tractography.odf)
offset() (in module designer.preprocessing.mrinfoutil)
optimal_lmax() (designer.fitting.dwipy.DWI method)
P
parfindViols() (designer.fitting.dwipy.DWI method)
pescheme() (in module designer.preprocessing.mrinfoutil)
plot() (in module designer.plotting.motionplot)
(in module designer.plotting.outlierplot)
print() (designer.preprocessing.util.DWIFile method)
R
radialSampling() (designer.fitting.dwipy.DWI method)
readnii() (in module designer.postprocessing.filters)
reslice() (in module designer.preprocessing.mrpreproc)
rician_correct() (in module designer.preprocessing.rician)
rician_img_correct() (in module designer.preprocessing.rician)
riciancorrect() (in module designer.preprocessing.mrpreproc)
S
savenii() (designer.tractography.odf.odfmodel method)
shbasis() (in module designer.tractography.odf)
shells() (in module designer.preprocessing.mrinfoutil)
size() (in module designer.preprocessing.mrinfoutil)
smooth() (in module designer.preprocessing.mrpreproc)
(in module designer.preprocessing.smoothing)
smooth_image() (in module designer.preprocessing.smoothing)
spacing() (in module designer.preprocessing.mrinfoutil)
stride_match() (in module designer.preprocessing.mrpreproc)
strides() (in module designer.preprocessing.mrinfoutil)
T
tensorReorder() (designer.fitting.dwipy.DWI method)
tensorType() (designer.fitting.dwipy.DWI method)
transform() (in module designer.preprocessing.mrinfoutil)
U
undistort() (in module designer.preprocessing.mrpreproc)
V
vectorize() (in module designer.plotting.snrplot)
(in module designer.system.utils)
W
wlls() (designer.fitting.dwipy.DWI method)
writenii() (in module designer.postprocessing.filters)
writeNii() (in module designer.system.utils)
Read the Docs
v: latest
Versions
latest
stable
v1.0-rc9
develop
Downloads
pdf
html
epub
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.